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Rd | 2 src/phangorn.c | 270 - 29 files changed, 1611 insertions( ), 803 deletions(-) Package coin updated to version 1.0-8 with previous version 1.0-7 dated 2009-09-29 Author: Torsten Hothorn, Kurt Hornik, Mark A. All MCMC samplers are coded in C for improved efficiency. Rd |only sv Socket-0.9-48/sv Socket/test CLI/test CLI. Provides a method for mapping US ZIP codes, including those of letter recipients. Attribute subset selection is the process of identifying and removing as much of the irrevelant and redundant information as possible.

Diff between meta versions 1.1-2 dated 2009-10-11 and 1.1-3 dated 2009-10-30 meta-1.1-2/meta/Change Logs |only meta-1.1-3/meta/Change Log |only meta-1.1-3/meta/DESCRIPTION | 8 - meta-1.1-3/meta/INDEX | 3 meta-1.1-3/meta/NAMESPACE | 4 meta-1.1-3/meta/R/funnel.default. R | 223 ----------------------------------- meta-1.1-3/meta/R/trimfill.default. Diff between accuracy versions 1.32 dated 2009-05-04 and 1.33 dated 2009-10-30 accuracy-1.32/accuracy/inst/doc/|only accuracy-1.33/accuracy/CHANGELOG | 10 accuracy-1.33/accuracy/DESCRIPTION | 10 accuracy-1.33/accuracy/NAMESPACE | 1 accuracy-1.33/accuracy/R/coef Functions. R | 89 accuracy-1.33/accuracy/inst/CITATION | 2 accuracy-1.33/accuracy/inst/doc/| 1594 ------ accuracy-1.33/accuracy/inst/doc/accuracy_vignette-plot1| 493 -- accuracy-1.33/accuracy/inst/doc/accuracy_vignette-plot1| 542 -- accuracy-1.33/accuracy/inst/doc/accuracy_vignette-plot2| 629 -- accuracy-1.33/accuracy/inst/doc/accuracy_vignette-plot2| 1014 --- accuracy-1.33/accuracy/inst/doc/accuracy_vignette. The GDAL and PROJ.4 libraries are external to the package, and, when installing the package from source, must be correctly installed first. Version: 1.0 Date: 2009-10-12 Depends: R ( Description: Generates a valid colouring of a graph by solving the system of inequations representing the graph. The QTL mapping problem is represented as a model selection problem, where each model is a linear regression of the trait on a selected set of marker values.

Functions for tests of bias, forest and funnel plot. Description: This is a suite of tools designed to test and improve the accuracy of statistical computation, including: Summarization of the sensitivity of linear and non-linear models (lm, glm, mle, nls) to measurement and numerical error; Sensitivity analysis of dozens of models as run through Zelig; A generalized cholesky method for correcting non-invertable Hessians; Tests for the global optimality of non-linear regression and maximum likelihood results; Tools for obtaining true random numbers using entropy collected from the system and/or entropy servers on the internet; A method for converting floating point numbers to normalized fractions; Benchmark data for checking the accuracy of basic distribution functions. Diff between spgrass6 versions 0.6-9 dated 2009-09-05 and 0.6-11 dated 2009-10-30 = 1.3.1) and access to projection/transformation operations from the PROJ.4 library. R | 1 inst/Change Log | 9 -- src/| 18 ------- 8 files changed, 36 insertions( ), 16 deletions(-) New package gcolor with initial version 1.0 Package: gcolor Type: Package Title: Provides an Inequation Algorithm Function and a solution to import DIMACS files. Data is assumed to be from a QTL mapping family with DNA markers genotyped along the genome.

Diff between rsm versions 1.20 dated 2009-10-20 and 1.21 dated 2009-10-30 DESCRIPTION | 6 R/contour-lm. Rnw | 594 ---------------------------- inst/doc/|only inst/doc/|only inst/doc/|binary 7 files changed, 310 insertions( ), 304 deletions(-) Title: Meta-Analysis with R Description: Fixed and random effects meta-analysis. Mc Donald Title: Tools for testing and improving accuracy of statistical results. Both the R interface and Weka itself are contained in the RWeka package. Diff between RWeka versions 0.3-22 dated 2009-10-18 and 0.3-23 dated 2009-10-30 Package spgrass6 updated to version 0.6-11 with previous version 0.6-9 dated 2009-09-05 Author: Roger Bivand Title: Interface between GRASS 6 geographical information system and R Description: Interpreted interface between GRASS 6 geographical information system and R, based on starting R from within the GRASS environment, or running free-standing R in a temporary GRASS location; the package provides facilities for using all GRASS commands from the R command line.

Rnw | 9 inst/doc/sv | 23 inst/doc/sv | 2419 -------------------- inst/komodo/|binary man/gui Test Report. Maximum, minimum, or an allowable range of differences between units on one variable can be set. Diagnose potential interference between units assigned to different treatment conditions. Diff between block Tools versions 0.3 dated 2009-04-30 and 0.4-1 dated 2009-10-29 CHANGELOG | 6 DESCRIPTION | 10 - R/block. Diff between Bmix versions 0.1 dated 2009-10-27 and 0.2 dated 2009-10-29 DESCRIPTION | 25 ----------- demo/DPreg.

R | 9 inst/doc/Lego Cond |binary inst/doc/|binary inst/doc/|binary inst/doc/coin_|binary inst/documentation/html/Classes_8| 2 inst/documentation/html/Classes_8| 2 inst/documentation/html/Classes_8| 2 inst/documentation/html/Classes_8| 2 inst/documentation/html/Helpers_8| 2 inst/documentation/html/Helpers_8| 2 inst/documentation/html/Helpers_8| 2 inst/documentation/html/Helpers_8| 2 inst/documentation/html/Linear Statistic_8| 2 inst/documentation/html/Linear Statistic_8| 2 inst/documentation/html/Linear Statistic_8| 2 inst/documentation/html/Linear Statistic_8| 2 inst/documentation/html/Streitberg Roehmel_8| 2 inst/documentation/html/Streitberg Roehmel_8| 2 inst/documentation/html/| 2 inst/documentation/html/| 2 inst/documentation/html/coin__common_8| 2 inst/documentation/html/coin__common_8| 2 inst/documentation/html/dir_551893842a8579748e8cac726fc2| 2 inst/documentation/html/| 2 inst/documentation/html/| 2 inst/documentation/html/| 2 inst/documentation/html/functions_| 2 inst/documentation/html/| 12 inst/documentation/html/globals_| 12 inst/documentation/html/globals_| 2 inst/documentation/html/graph_| 2 inst/documentation/html/| 2 inst/documentation/html/structcel | 2 inst/documentation/html/structcel | 4 inst/documentation/html/vande Wiel_8| 174 ----- inst/documentation/html/vande Wiel_8| 98 -- inst/documentation/html/vande Wiel_8c_18f96560e9861316db1121e8fe69ef07_|only inst/documentation/html/vande Wiel_8c_18f96560e9861316db1121e8fe69ef07_cgraph.md5 |only inst/documentation/html/vande Wiel_8c_18f96560e9861316db1121e8fe69ef07_|only inst/documentation/html/vande Wiel_8c_6bee1e9d657a3174d5a2ecafac2b1d6e_|only inst/documentation/html/vande Wiel_8c_6bee1e9d657a3174d5a2ecafac2b1d6e_cgraph.md5 |only inst/documentation/html/vande Wiel_8c_6bee1e9d657a3174d5a2ecafac2b1d6e_|only inst/documentation/html/vande Wiel_8c_b36f32483d67f870c4dca34aac14f5b9_|only inst/documentation/html/vande Wiel_8c_b36f32483d67f870c4dca34aac14f5b9_cgraph.md5 |only inst/documentation/html/vande Wiel_8c_b36f32483d67f870c4dca34aac14f5b9_|only inst/documentation/latex/dir_551893842a8579748e8cac726fc2aaac_| 16 inst/documentation/latex/| 4 inst/documentation/latex/| 2 inst/documentation/latex/structcel | 2 inst/documentation/latex/vande Wiel_8| 50 - inst/documentation/latex/vande Wiel_8c_18f96560e9861316db1121e8fe69ef07_|only inst/documentation/latex/vande Wiel_8c_18f96560e9861316db1121e8fe69ef07_cgraph.md5 |only inst/documentation/latex/vande Wiel_8c_18f96560e9861316db1121e8fe69ef07_|only inst/documentation/latex/vande Wiel_8c_6bee1e9d657a3174d5a2ecafac2b1d6e_|only inst/documentation/latex/vande Wiel_8c_6bee1e9d657a3174d5a2ecafac2b1d6e_cgraph.md5 |only inst/documentation/latex/vande Wiel_8c_6bee1e9d657a3174d5a2ecafac2b1d6e_|only inst/documentation/latex/vande Wiel_8c_b36f32483d67f870c4dca34aac14f5b9_|only inst/documentation/latex/vande Wiel_8c_b36f32483d67f870c4dca34aac14f5b9_cgraph.md5 |only inst/documentation/latex/vande Wiel_8c_b36f32483d67f870c4dca34aac14f5b9_|only inst/documentation/man/man3/Classes.c.3 | 2 inst/documentation/man/man3/Classes.h.3 | 2 inst/documentation/man/man3/Helpers.c.3 | 2 inst/documentation/man/man3/Helpers.h.3 | 2 inst/documentation/man/man3/Linear Statistic.c.3 | 2 inst/documentation/man/man3/Linear Statistic.h.3 | 2 inst/documentation/man/man3/Streitberg Roehmel.c.3 | 2 inst/documentation/man/man3/_home_hothorn_projects_svn_Rpkgs_trunk_coin_src_.3 | 2 inst/documentation/man/man3/cel W.3 | 4 inst/documentation/man/man3/coin_common.h.3 | 2 inst/documentation/man/man3/vande Wiel.c.3 | 26 - src/vande Wiel.c | 30 - tests/Examples/coin-Ex. R | 15 TODO | 17 inst/CITATION | 10 inst/doc/sv Unit. Moore Title: Block, assign, and diagnose potential interference in randomized experiments Description: Blocks units into experimental blocks, with one unit per treatment condition, by creating a measure of multivariate distance between all possible pairs of units. Since particles are repeatedly copied, it is not an especially efficient implementation. Diff between wasim versions 1.0 dated 2008-12-17 and 1.1 dated 2009-10-28 wasim-1.0/wasim/R/direction.error.

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We have found these are good approximations provided (1.) the marker spacing is reasonable (less than 30c M); (2.) the sample size is 100 or more for fully genotyped populations; and (3.) around 10 imputations are used and the effect of any given QTL on the trait is not large. Diff between r WMBAT versions 1.0 dated 2009-09-21 and 2.0 dated 2009-10-29 DESCRIPTION | 15 -------- man/Build Bayes Net.

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